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CRTISO2 protein (Phaeodactylum tricornutum) - STRING interaction network
"CRTISO2" - Carotenoid isomerase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRTISO2Carotenoid isomerase (635 aa)    
Predicted Functional Partners:
PSY
Phytoene synthase (309 aa)
 
   
  0.760
PDS2
Amine oxidase; Phytoene desaturase (589 aa)
   
     
  0.682
ZDS
Zeta-carotene desaturase (495 aa)
   
     
  0.665
VDE
Violaxanthin deepoxidase (262 aa)
     
   
  0.661
PDS1
Amine oxidase; Phytoene dehydrogenase (597 aa)
   
     
  0.619
Phatr12330
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (159 aa)
     
   
  0.608
DXR
1-deoxy-d-xylulose-5-phosphate reductoisomerase (402 aa)
   
   
  0.600
Phatr43374
9-cis-epoxycarotenoid dioxygenase (617 aa)
     
   
  0.573
MPDC
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes (415 aa)
           
  0.539
ZEP1
Zeaxanthin epoxidase (565 aa)
   
   
  0.534
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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