STRINGSTRING
Phatr54834 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54834" - Dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54834Dehydrogenase (392 aa)    
Predicted Functional Partners:
ACL
Atp-citrate synthase (1082 aa)
       
  0.755
ACC1
Acetyl-coa carboxylase (2092 aa)
       
  0.672
PK2
Pyruvate kinase (513 aa)
         
  0.605
PK4b
Pyruvate kinase (539 aa)
         
  0.605
PK4a
Pyruvate kinase (535 aa)
         
  0.605
PK5
Pyruvate kinase (543 aa)
         
  0.604
PK1
Pyruvate kinase (591 aa)
         
  0.604
ACC2
Biotin carboxylase (2282 aa)
       
  0.593
FUM1
Precursor of fumarase fumarase (567 aa)
       
  0.588
PK3
Pyruvate kinase (543 aa)
         
  0.555
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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