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CRTISO3 protein (Phaeodactylum tricornutum) - STRING interaction network
"CRTISO3" - Carotenoid isomerase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRTISO3Carotenoid isomerase (595 aa)    
Predicted Functional Partners:
PSY
Phytoene synthase (309 aa)
 
 
  0.879
ZDS
Zeta-carotene desaturase (495 aa)
 
   
  0.796
PDS2
Phytoene desaturase (589 aa)
 
   
  0.743
Phatr13160
Predicted protein (314 aa)
   
 
  0.721
Phatr33017
Predicted protein; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (711 aa)
 
   
  0.721
Phatr48985
Predicted protein (2198 aa)
   
 
  0.670
Phatr33756
Predicted protein (711 aa)
   
 
  0.670
Phatr15806
Pds-like3, phytoene desaturase-like protein (506 aa)
 
   
  0.652
PDS1
Phytoene dehydrogenase (597 aa)
 
   
  0.646
Phatr54051
Pds-like2, phytoene desaturase-like protein (605 aa)
 
   
  0.642
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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