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STRINGSTRING
Phatr54869 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54869" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54869Predicted protein (445 aa)    
Predicted Functional Partners:
Phatr27762
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (160 aa)
     
 
  0.992
Phatr42712
Predicted protein (219 aa)
     
 
  0.967
Phatr24186
Predicted protein (1088 aa)
     
 
  0.942
Phatr29967
Predicted protein (871 aa)
     
 
  0.929
Phatr46440
Predicted protein (1030 aa)
     
 
  0.926
Ran1
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (213 aa)
     
 
  0.911
Ran2
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (254 aa)
     
 
  0.911
Phatr15688
Predicted protein (121 aa)
     
   
  0.906
Phatr48534
Predicted protein (1026 aa)
     
   
  0.867
Phatr48647
Predicted protein (636 aa)
     
 
  0.863
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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