STRINGSTRING
Phatr54915 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54915" - Eukaryotic cysteine synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54915Eukaryotic cysteine synthase (356 aa)    
Predicted Functional Partners:
Phatr13476
Predicted protein (271 aa)
 
 
  0.988
Phatr49903
Predicted protein (654 aa)
   
  0.973
Phatr15917
Cystathionine gamma-lyase (392 aa)
 
  0.973
Phatr9538
Predicted protein (593 aa)
   
 
  0.960
METH
Methionine synthase (1245 aa)
       
  0.918
Phatr49591
Predicted protein (202 aa)
       
  0.909
AAT_2
Aspartate aminotransferase (426 aa)
         
  0.903
AAT_1
Aspartate transaminase (435 aa)
         
  0.903
Phatr18319
Adenosylhomocysteinase (481 aa)
   
 
  0.900
Phatr46040
Predicted protein (359 aa)
       
  0.861
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (15%) [HD]