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Phatr54969 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54969" - Aliphatic amidase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54969Aliphatic amidase (357 aa)    
Predicted Functional Partners:
Phatr36398
Predicted protein (386 aa)
       
  0.702
Phatr29887
Predicted protein (564 aa)
   
 
  0.669
Phatr40650
Predicted protein (582 aa)
       
  0.667
ACL
Atp-citrate synthase (1082 aa)
   
 
  0.623
Phatr7913
Predicted protein (76 aa)
       
  0.572
Phatr7910
Predicted protein (70 aa)
       
  0.572
Phatr55177
Spermine/spermidine synthase (299 aa)
       
  0.572
Phatr51460
Annotation not available (348 aa)
       
  0.572
Phatr13386
Spermine/spermidine synthase (275 aa)
       
  0.572
Phatr11608
Predicted protein (76 aa)
       
  0.572
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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