• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr54974 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54974" - Hydrolase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54974Hydrolase (494 aa)    
Predicted Functional Partners:
Phatr43118
Predicted protein (757 aa)
   
   
  0.863
Phatr47058
Predicted protein (606 aa)
     
   
  0.862
Phatr47027
Eukaryotic translation initiation factor 3 subunit M; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (400 aa)
           
  0.861
Phatr20460
Predicted protein; Belongs to the membrane-bound acyltransferase family (499 aa)
           
  0.797
Phatr46570
Predicted protein (346 aa)
     
 
  0.681
Phatr43678
Predicted protein (273 aa)
     
 
  0.681
Phatr45551
Predicted protein (535 aa)
   
   
  0.634
Phatr12985
Predicted protein (132 aa)
     
   
  0.619
Phatr49637
Predicted protein (517 aa)
     
   
  0.582
Phatr32057
Predicted protein (840 aa)
     
   
  0.582
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (9%) [HD]