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STRINGSTRING
Phatr54992 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54992" - DNA primase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54992DNA primase; Belongs to the eukaryotic-type primase small subunit family (458 aa)    
Predicted Functional Partners:
Phatr46806
Predicted protein (463 aa)
   
  0.999
POLA
DNA polymerase (1147 aa)
     
  0.999
RFC4
Predicted protein (350 aa)
     
 
  0.994
Phatr1690
Predicted protein (495 aa)
     
   
  0.993
Phatr54677
DNA polymerase (1087 aa)
     
  0.992
Phatr52678
DNA polymerase (2155 aa)
     
  0.991
MCM5
Predicted protein; Belongs to the MCM family (667 aa)
     
 
  0.990
Phatr50274
Predicted protein (574 aa)
     
 
  0.989
Phatr37723
Predicted protein (470 aa)
     
  0.988
Phatr51407
Pol1-like DNA polymerase (774 aa)
     
 
  0.982
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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