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PEPCK1 protein (Phaeodactylum tricornutum) - STRING interaction network
"PEPCK1" - Phosphoenolpyruvate carboxykinase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPCK1Phosphoenolpyruvate carboxykinase (612 aa)    
Predicted Functional Partners:
MS
Malate synthase; Belongs to the malate synthase family (553 aa)
   
   
  0.981
PPdK
Predicted protein (1011 aa)
   
   
  0.932
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family (614 aa)
   
   
  0.926
MDH
Predicted protein; Belongs to the LDH/MDH superfamily (324 aa)
   
   
  0.913
Phatr30145
Citrate synthase; Belongs to the citrate synthase family (471 aa)
   
   
  0.911
Phatr14762
Isocitrate dehydrogenase (357 aa)
   
   
  0.889
Phatr14401
Isocitrate lyase; Belongs to the isocitrate lyase/PEP mutase superfamily. Isocitrate lyase family (539 aa)
     
   
  0.847
Phatr55040
D-lactate dehydrogenase (506 aa)
     
 
  0.840
Phatr18345
Predicted protein (348 aa)
     
   
  0.822
SBPase
Seduheptulose bisphosphatase (325 aa)
   
   
  0.810
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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