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STRINGSTRING
PsbM protein (Phaeodactylum tricornutum) - STRING interaction network
"PsbM" - Photosystem II subunit in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PsbMPhotosystem II subunit (108 aa)    
Predicted Functional Partners:
PsbO
Oxygen-evolving enhancer protein 1 (308 aa)
          
  0.920
Phatr48359
Predicted protein (218 aa)
          
  0.912
OEE3
Oxygen-evolving enhancer protein 3 (200 aa)
          
  0.864
Phatr9078
Predicted protein (105 aa)
          
    0.800
Phatr26293
Predicted protein; Photosystem II 12 kDa extrinsic protein, chloroplastic (148 aa)
          
    0.800
PetJ
Cytochrome c6, cytochrome c553 (133 aa)
            
  0.558
Lhcr12
Protein fucoxanthin chlorophyll a/c protein (202 aa)
            
  0.478
Lhcr14
Protein fucoxanthin chlorophyll a/c protein (162 aa)
            
  0.459
atpB
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane (501 aa)
            
  0.459
Lhcf14
Fucoxanthin chlorophyll a/c protein, lhcf type (195 aa)
            
  0.457
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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