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STRINGSTRING
Sit1 protein (Phaeodactylum tricornutum) - STRING interaction network
"Sit1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sit1Predicted protein (506 aa)    
Predicted Functional Partners:
HSP20
HSP20; Belongs to the small heat shock protein (HSP20) family (216 aa)
           
  0.557
Phatr54873
Metacaspase (404 aa)
           
  0.459
Phatr54872
Metacaspase (322 aa)
           
  0.459
Phatr51953
Metacaspase (292 aa)
           
  0.459
Phatr48151
Metacaspase (369 aa)
           
  0.459
Phatr32992
Metacaspase (633 aa)
           
  0.459
Phatr55108
Heat shock factor (718 aa)
           
  0.455
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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