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PDS2 protein (Phaeodactylum tricornutum) - STRING interaction network
"PDS2" - Phytoene desaturase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDS2Phytoene desaturase (589 aa)    
Predicted Functional Partners:
PSY
Phytoene synthase (309 aa)
 
  0.936
Phatr43904
Phytoene desaturase. zeta-carotene desaturase. bacterial-like protein (696 aa)
       
  0.876
PDS1
Phytoene dehydrogenase (597 aa)
   
   
0.809
Phatr16955
Predicted protein (231 aa)
   
 
  0.757
CRTISO1
Carotenoid isomerase (633 aa)
 
   
  0.745
CRTISO3
Carotenoid isomerase (595 aa)
 
   
  0.743
CRTISO2
Carotenoid isomerase (635 aa)
 
   
  0.743
CRTISO4
Carotenoid isomerase (598 aa)
 
   
  0.733
Phatr13160
Predicted protein (314 aa)
   
 
  0.727
CRTISO5
CRTISO5 carotenoid isomerase 5,phytoene dehydrogenase-related protein (530 aa)
 
   
  0.662
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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