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STRINGSTRING
Phatr55114 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr55114" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr55114Predicted protein (617 aa)    
Predicted Functional Partners:
Phatr17936
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family (206 aa)
     
 
  0.928
Rab6
Predicted protein (236 aa)
     
 
  0.874
Phatr12113
Predicted protein (284 aa)
     
 
  0.850
Phatr43830
Vacuolar protein sorting-associated protein 35 (1712 aa)
     
 
  0.832
Phatr12157
Predicted protein (330 aa)
     
 
  0.825
Phatr10479
Predicted protein (300 aa)
     
   
  0.799
Rab7
Predicted protein (237 aa)
     
 
  0.690
Phatr40171
Predicted protein (364 aa)
     
 
  0.690
Phatr45698
Predicted protein (908 aa)
     
   
  0.623
Phatr45989
Predicted protein (1008 aa)
     
   
  0.585
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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