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STRINGSTRING
Phatr5512 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5512" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5512Predicted protein (250 aa)    
Predicted Functional Partners:
Phatr42276
Predicted protein (1263 aa)
 
            0.611
Phatr16375
Pyrroline-5-carboxylate reductase (266 aa)
 
   
  0.563
Phatr31147
Probable methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) (559 aa)
   
   
  0.527
Phatr51528
Predicted protein (377 aa)
 
        0.464
Phatr25379
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family (289 aa)
 
   
  0.455
Phatr11722
Predicted protein (354 aa)
   
      0.450
Phatr36034
Predicted protein (237 aa)
   
   
  0.446
Phatr14996
Predicted protein (85 aa)
   
   
  0.446
Phatrdraft780
Predicted protein (568 aa)
   
      0.431
Phatr26346
Predicted protein (647 aa)
   
      0.431
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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