STRINGSTRING
RRP protein (Phaeodactylum tricornutum) - STRING interaction network
"RRP" - Ribosomal RNA processing protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RRPRibosomal RNA processing protein (354 aa)    
Predicted Functional Partners:
Phatr37291
Predicted protein (248 aa)
     
  0.915
Phatr23286
Predicted protein (274 aa)
   
  0.903
Phatr16766
Predicted protein (140 aa)
   
  0.903
Phatr12322
Predicted protein (212 aa)
   
  0.903
Phatrdraft509
Predicted protein (308 aa)
   
  0.900
Phatr12921
Predicted protein (240 aa)
   
  0.900
Phatr42826
Predicted protein (1192 aa)
       
 
  0.818
Phatr45692
Predicted protein (700 aa)
     
  0.810
Phatr22703
Predicted protein (311 aa)
     
  0.810
Phatr43677
Predicted protein (813 aa)
     
  0.766
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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