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Phatr55177 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr55177" - Spermine/spermidine synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr55177Spermine/spermidine synthase (299 aa)    
Predicted Functional Partners:
ODC2
Ornithine decarboxylase (390 aa)
   
  0.973
Phatr3362
Predicted protein (322 aa)
     
 
  0.960
Phatr38930
Predicted protein (307 aa)
       
  0.955
Phatr14626
Predicted protein (261 aa)
         
  0.900
ODC3
Ornithine decarboxylase (564 aa)
   
  0.867
Phatr38509
Predicted protein (301 aa)
       
  0.803
Phatr7867
Predicted protein (80 aa)
   
 
  0.779
Phatr7621
Predicted protein (80 aa)
   
 
  0.779
Phatr7617
Predicted protein (94 aa)
   
 
  0.779
Phatr2834
Predicted protein (392 aa)
   
  0.746
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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