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STRINGSTRING
Phatr55229 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr55229" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr55229Predicted protein; Belongs to the AAA ATPase family (379 aa)    
Predicted Functional Partners:
hNpl4
Predicted protein (473 aa)
     
 
  0.607
Phatr34061
Predicted protein (244 aa)
 
 
 
  0.599
Phatr44360
Predicted protein (416 aa)
     
 
  0.581
hUfd2
Predicted protein (82 aa)
     
 
  0.571
sUfd1
Predicted protein (191 aa)
     
 
  0.530
hUfd1
Predicted protein (202 aa)
     
 
  0.530
Phatr42625
Predicted protein (724 aa)
     
 
  0.510
Phatr43033
Predicted protein (641 aa)
     
 
  0.507
Phatr28219
Predicted protein; Belongs to the AAA ATPase family (447 aa)
   
 
0.473
Phatr15555
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
 
  0.472
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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