STRINGSTRING
Phatr5527 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5527" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5527Predicted protein (170 aa)    
Predicted Functional Partners:
ACC2
Biotin carboxylase (2282 aa)
   
 
  0.892
Phatr45947
Predicted protein (403 aa)
   
  0.878
KCT1
Beta-ketoacyl-coa thiolase (386 aa)
   
  0.878
KCT3
Beta-ketoacyl-CoA thiolase (457 aa)
   
  0.878
Phatr23913
Acetyl-coa c-acetyltransferase (396 aa)
   
  0.878
DEI1
Delta-3,5-delta-2,4-dienoyl-CoA isomerase (291 aa)
   
  0.832
FAO1
Peroxisomal bifunctional enzyme (767 aa)
 
  0.829
Phatr35240
Predicted protein (684 aa)
 
  0.808
HAD2
3-hydroxyacyl-coenzyme A dehydrogenase (329 aa)
 
  0.808
ACC1
Acetyl-coa carboxylase (2092 aa)
   
 
  0.803
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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