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STRINGSTRING
Phatr5532 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5532" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5532Predicted protein (238 aa)    
Predicted Functional Partners:
Phatr9446
Predicted protein (220 aa)
     
 
  0.925
Phatr42302
Predicted protein (289 aa)
     
 
  0.922
Phatr50796
Predicted protein (457 aa)
     
 
  0.919
Phatr36955
Predicted protein (132 aa)
     
 
  0.909
Phatr11462
Predicted protein (130 aa)
     
 
  0.909
Phatr43431
Predicted protein (471 aa)
           
  0.890
Phatr29793
Predicted protein (424 aa)
           
  0.889
Phatr3687
Predicted protein (239 aa)
     
   
  0.777
Phatr8828
Predicted protein (291 aa)
           
  0.770
Phatr39627
Predicted protein (410 aa)
           
  0.766
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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