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STRINGSTRING
Phatr5588 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5588" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5588Predicted protein (156 aa)    
Predicted Functional Partners:
Phatr46257
Predicted protein (238 aa)
     
 
  0.908
Phatr42998
Predicted protein (642 aa)
 
     
    0.900
Phatr15233
Predicted protein (151 aa)
     
0.886
Phatr50048
Predicted protein (225 aa)
       
 
  0.843
Phatr5762
Predicted protein (236 aa)
     
 
  0.838
Phatr46543
Predicted protein (532 aa)
     
 
  0.830
Phatr10494
Predicted protein (98 aa)
     
 
  0.826
Phatr16987
Predicted protein; Belongs to the DEAD box helicase family (404 aa)
     
 
  0.812
Phatr50132
Predicted protein (1477 aa)
     
 
  0.803
Phatr42364
Predicted protein (89 aa)
     
 
  0.788
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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