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STRINGSTRING
Phatr5608 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5608" - Ubiquitin carrier protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5608Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (161 aa)    
Predicted Functional Partners:
APC11
Predicted protein (82 aa)
     
 
  0.948
APC3
Predicted protein (336 aa)
     
 
  0.948
UBI3
Ubiquitin extension protein 3 (155 aa)
       
 
  0.940
APC8
Predicted protein (648 aa)
     
 
  0.931
APC2
Predicted protein; Belongs to the cullin family (767 aa)
     
 
  0.928
Phatr20308
Predicted protein; Belongs to the ubiquitin-conjugating enzyme family (148 aa)
     
 
  0.832
Phatr15952
Predicted protein (123 aa)
 
            0.737
CUL1_2
CULlin protein 4; Belongs to the cullin family (821 aa)
       
 
  0.676
Phatr45802
Predicted protein (2447 aa)
     
 
  0.675
sUbi
Ubiquitin-like protein (268 aa)
       
 
  0.662
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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