STRINGSTRING
Phatr5617 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5617" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5617Predicted protein (239 aa)    
Predicted Functional Partners:
PDS-like1
PDS-like 1, phytoene desaturase-like protein, phytoene dehydrogenase-like protein (545 aa)
   
          0.504
Phatr43187
Predicted protein (557 aa)
   
          0.503
Phatr54051
Pds-like2, phytoene desaturase-like protein (605 aa)
   
          0.501
CRTISO2
Carotenoid isomerase (635 aa)
   
          0.498
Phatr35579
Predicted protein (511 aa)
   
          0.496
Phatr7660
Predicted protein (88 aa)
   
          0.487
Phatr39868
Predicted protein (248 aa)
   
          0.486
Phatr30636
Predicted protein (483 aa)
   
          0.479
Phatr15806
Pds-like3, phytoene desaturase-like protein (506 aa)
   
          0.478
Phatr46880
Predicted protein (576 aa)
   
          0.475
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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