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STRINGSTRING
Phatr5702 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5702" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5702Predicted protein (227 aa)    
Predicted Functional Partners:
Phatr5236
Predicted protein (271 aa)
   
     
  0.938
Phatr31975
Predicted protein (397 aa)
           
  0.910
Phatr20589
Predicted protein (434 aa)
   
     
  0.905
Phatr8694
Predicted protein (63 aa)
     
   
  0.905
Phatr42932
Predicted protein (1193 aa)
           
  0.812
Phatr35766
Predicted protein (828 aa)
       
 
  0.777
Phatr43723
Predicted protein (346 aa)
           
  0.582
Phatr8457
Predicted protein (59 aa)
           
  0.575
Phatr31423
Predicted protein (357 aa)
           
  0.562
Phatr12161
Predicted protein (250 aa)
     
   
  0.422
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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