STRINGSTRING
Phatr6254 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6254" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6254Predicted protein (175 aa)    
Predicted Functional Partners:
Phatr14502
Predicted protein (177 aa)
     
 
  0.740
atpB
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane (501 aa)
       
      0.604
Phatr44603
Predicted protein (220 aa)
       
      0.604
Phatr31465
Predicted protein (679 aa)
       
      0.544
AtpC
ATP synthase gamma chain, chloroplastic (369 aa)
       
      0.544
Phatr18398
ATP synthase gamma chain (305 aa)
       
      0.544
Atp1
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane (509 aa)
       
      0.544
Phatr14945
Predicted protein (196 aa)
     
 
  0.472
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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