• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr6254 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6254" - Golgi apparatus membrane protein TVP23 homolog in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6254Golgi apparatus membrane protein TVP23 homolog (175 aa)    
Predicted Functional Partners:
Phatr14502
Protein YIPF (177 aa)
     
 
  0.898
Phatr12535
Protein kish; Involved in the early part of the secretory pathway (72 aa)
     
 
  0.891
SytB
Predicted protein; Belongs to the syntaxin family (260 aa)
     
   
  0.694
Phatr44631
Protein YIPF (370 aa)
     
 
  0.582
Phatr14945
Predicted protein (196 aa)
     
 
  0.522
Phatr28794
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V- ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase (818 aa)
       
 
  0.412
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (8%) [HD]