STRINGSTRING
Phatr6258 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6258" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6258Predicted protein (205 aa)    
Predicted Functional Partners:
Phatr42570
Predicted protein (1267 aa)
     
 
  0.996
Phatr13820
Predicted protein (282 aa)
     
  0.995
Phatr31725
Predicted protein (629 aa)
     
  0.995
Phatr30019
Predicted protein (299 aa)
     
  0.985
Phatr2182
Predicted protein (360 aa)
     
 
  0.985
Phatr37596
Predicted protein (531 aa)
     
  0.983
Phatr25666
Predicted protein (885 aa)
     
 
  0.980
Phatr9235
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
     
      0.980
Phatr44242
Predicted protein (890 aa)
     
 
  0.980
Phatr15354
Predicted protein (300 aa)
     
 
  0.979
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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