STRINGSTRING
Phatr6402 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6402" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6402Predicted protein (170 aa)    
Predicted Functional Partners:
Phatr33845
Predicted protein (315 aa)
   
        0.527
Phatrdraft1025
Tocopherol cyclase (515 aa)
   
          0.524
Phatr49879
Predicted protein (253 aa)
   
          0.524
Phatr46071
Predicted protein (180 aa)
   
          0.522
Phatr48066
Predicted protein (293 aa)
   
          0.517
Phatr21970
Predicted protein (495 aa)
   
          0.515
Phatr3296
Predicted protein (380 aa)
   
          0.512
Phatr47802
Predicted protein (600 aa)
   
          0.508
Phatr49534
Predicted protein (610 aa)
   
          0.507
Phatr35336
Predicted protein (125 aa)
   
          0.493
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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