Phatr6433 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Phatr6433

Predicted protein (143 aa)

Predicted Functional Partners:

Phatr38130

0.982

Phatr32097

0.962

Phatr30898

0.962

Phatr31375

0.924

Phatr11901

0.924

Phatr18620

0.887

Phatr11271

0.791

Phatr47496

0.766

Phatr19669

0.728

Phatr49220

0.724

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Phatr11271	Phatr11901	Predicted protein	Predicted protein	0.964
Phatr11271	Phatr18620	Predicted protein	Predicted protein	0.861
Phatr11271	Phatr30898	Predicted protein	Vacuolar protein	0.872
Phatr11271	Phatr31375	Predicted protein	Predicted protein	0.964
Phatr11271	Phatr32097	Predicted protein	Predicted protein	0.872
Phatr11271	Phatr38130	Predicted protein	Predicted protein	0.791
Phatr11271	Phatr6433	Predicted protein	Predicted protein	0.791
Phatr11901	Phatr11271	Predicted protein	Predicted protein	0.964
Phatr11901	Phatr18620	Predicted protein	Predicted protein	0.980
Phatr11901	Phatr19669	Predicted protein	Predicted protein	0.551
Phatr11901	Phatr30898	Predicted protein	Vacuolar protein	0.913
Phatr11901	Phatr32097	Predicted protein	Predicted protein	0.913
Phatr11901	Phatr38130	Predicted protein	Predicted protein	0.978
Phatr11901	Phatr47496	Predicted protein	Predicted protein	0.781
Phatr11901	Phatr49220	Predicted protein	Predicted protein	0.724
Phatr11901	Phatr6433	Predicted protein	Predicted protein	0.924
Phatr18620	Phatr11271	Predicted protein	Predicted protein	0.861
Phatr18620	Phatr11901	Predicted protein	Predicted protein	0.980
Phatr18620	Phatr19669	Predicted protein	Predicted protein	0.614
Phatr18620	Phatr30898	Predicted protein	Vacuolar protein	0.964

page 1 of 5

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2017

Credits

Access

Info

About