STRINGSTRING
Phatr6586 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6586" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6586Predicted protein (152 aa)    
Predicted Functional Partners:
Phatr45548
Predicted protein (613 aa)
     
  0.984
Phatr42892
Predicted protein (4067 aa)
       
  0.961
Phatr47054
Predicted protein (450 aa)
       
 
  0.960
Phatr50228
Predicted protein (904 aa)
     
 
  0.959
Phatr42944
Predicted protein (1422 aa)
     
 
  0.956
Phatr3281
Predicted protein (354 aa)
     
 
  0.940
Phatr10199
Predicted protein (203 aa)
       
 
  0.893
Phatr45153
Predicted protein (523 aa)
     
  0.856
ARP
Actin related protein (463 aa)
     
  0.856
Phatr19568
Predicted protein (485 aa)
     
  0.854
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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