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Phatr6635 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6635" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6635Predicted protein (159 aa)    
Predicted Functional Partners:
Phatr43641
Predicted protein (617 aa)
       
 
  0.958
Phatr16608
Predicted protein (57 aa)
       
  0.866
RabGDI
Predicted protein (446 aa)
       
 
  0.768
Phatr40171
Predicted protein (364 aa)
     
 
  0.730
Phatr45401
Predicted protein (830 aa)
     
  0.698
Phatr3137
Predicted protein (392 aa)
     
  0.698
Phatr32097
Predicted protein (368 aa)
       
 
  0.691
Phatr30898
Vacuolar protein (429 aa)
       
 
  0.691
VPS45
Predicted protein (555 aa)
     
  0.675
Ras1
Predicted protein (191 aa)
   
 
  0.659
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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