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STRINGSTRING
sUbc6 protein (Phaeodactylum tricornutum) - STRING interaction network
"sUbc6" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sUbc6Predicted protein; Belongs to the ubiquitin-conjugating enzyme family (118 aa)    
Predicted Functional Partners:
UBC1
Ubiquitin-conjugating enzyme 1; Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (197 aa)
     
   
  0.583
Phatr48883
Predicted protein; Belongs to the ubiquitin-conjugating enzyme family (414 aa)
           
  0.573
Phatr26750
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (153 aa)
     
   
  0.536
Phatr44360
Predicted protein (416 aa)
     
 
  0.518
Phatr28433
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (167 aa)
     
   
  0.507
hHrd1
Predicted protein (632 aa)
     
 
  0.500
Phatr47933
Predicted protein (848 aa)
     
 
  0.500
Phatr48662
Predicted protein (998 aa)
     
 
  0.480
Phatr32877
Predicted protein (290 aa)
     
 
  0.480
Phatr10724
Predicted protein; Belongs to the ubiquitin-conjugating enzyme family (169 aa)
     
   
  0.452
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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