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STRINGSTRING
Phatr6698 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6698" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6698Predicted protein (106 aa)    
Predicted Functional Partners:
Phatr9860
Predicted protein (318 aa)
     
 
  0.994
NURF-55
Chromatin assembly factor subunit c (466 aa)
     
 
  0.978
H2A-m1
Histone H2A (138 aa)
     
 
  0.874
Phatr50120
Predicted protein (167 aa)
       
 
  0.854
Phatr46735
Predicted protein (163 aa)
       
 
  0.818
Phatr54121
Sex comb extra (411 aa)
     
 
  0.742
Phatr49232
Predicted protein (780 aa)
     
 
  0.742
Phatr48109
Predicted protein (857 aa)
     
 
  0.731
Phatr48747
Predicted protein (667 aa)
     
 
  0.713
Phatr45987
Predicted protein (2344 aa)
     
 
  0.713
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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