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Phatr6711 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6711" - Ribonuclease in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6711Ribonuclease; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (189 aa)    
Predicted Functional Partners:
Phatr52678
DNA polymerase (2155 aa)
     
 
  0.821
Phatr1690
Predicted protein (495 aa)
   
   
  0.791
Phatr54677
DNA polymerase (1087 aa)
     
 
  0.773
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
 
  0.768
PHATR_7646
Predicted protein (137 aa)
   
   
  0.723
Phatr54992
DNA primase; Belongs to the eukaryotic-type primase small subunit family (458 aa)
     
   
  0.704
Phatr13384
Predicted protein (594 aa)
       
 
  0.689
POLA
DNA polymerase (1147 aa)
     
 
  0.671
RFC3
Predicted protein (361 aa)
   
   
  0.647
MCM7
Predicted protein; Belongs to the MCM family (618 aa)
     
        0.634
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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