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Phatr6789 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6789" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6789Predicted protein (132 aa)    
Predicted Functional Partners:
Phatr16157
Predicted protein (175 aa)
   
   
  0.596
Phatr47297
Predicted protein (416 aa)
           
  0.582
Phatr49101
Predicted protein (174 aa)
         
  0.569
Phatr15689
Predicted protein (441 aa)
     
      0.549
Phatr1690
Predicted protein (495 aa)
   
 
  0.501
Phatr8185
Predicted protein (100 aa)
       
 
  0.483
Phatr20787
Predicted protein; Belongs to the peptidase M16 family (473 aa)
     
      0.477
Phatr29097
Predicted protein; Belongs to the universal ribosomal protein uS7 family (225 aa)
   
      0.436
Phatr49040
Predicted protein (248 aa)
   
          0.436
Phatr34582
Predicted protein (334 aa)
     
 
  0.431
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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