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STRINGSTRING
Phatr6807 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6807" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6807Predicted protein (163 aa)    
Predicted Functional Partners:
AroB
3-dehydroquinate synthase (431 aa)
 
  0.954
Phatr7664
Predicted protein (145 aa)
   
  0.938
EPSPsy
3-phosphoshikimate 1-carboxyvinyltransferase (483 aa)
   
  0.938
Phatr41702
Predicted protein (671 aa)
   
   
  0.935
Phatr43429
Chorismate synthase (442 aa)
 
   
  0.893
Phatr8772
Predicted protein (309 aa)
 
  0.882
Phatr17238
Anthranilate synthase (958 aa)
   
   
  0.875
P5CS
Delta-1-pyrroline-5-carboxylate synthase; Delta l-pyrroline-5-carboxylate synthetase; In the C-terminal section; belongs to the gamma- glutamyl phosphate reductase family (747 aa)
   
   
  0.863
Phatr18027
Predicted protein (706 aa)
   
   
  0.863
Phatr3267
Predicted protein (304 aa)
   
 
  0.716
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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