STRINGSTRING
Phatr6848 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6848" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6848Predicted protein (125 aa)    
Predicted Functional Partners:
Phatr49112
Predicted protein (494 aa)
 
 
  0.775
Phatr50281
Predicted protein (417 aa)
   
 
  0.654
Phatr28694
Predicted protein (316 aa)
     
        0.646
Phatr34493
Predicted protein (447 aa)
     
  0.557
Phatr28737
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (439 aa)
     
  0.557
EF-1
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (439 aa)
     
  0.557
Phatr15121
Predicted protein (450 aa)
     
  0.557
Phatr50056
Predicted protein (233 aa)
   
     
  0.545
Phatr29029
Predicted protein (574 aa)
     
    0.530
Phatr26837
Predicted protein (643 aa)
     
    0.530
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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