STRINGSTRING
Phatr6914 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6914" - Formylmethionine deformylase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6914Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins (160 aa)    
Predicted Functional Partners:
Phatr8720
Predicted protein (116 aa)
     
 
  0.688
Phatr27659
Predicted protein (157 aa)
     
 
  0.688
Phatr8024
Predicted protein (112 aa)
     
      0.627
Phatr29177
Predicted protein (185 aa)
     
      0.627
Phatr14917
Predicted protein (336 aa)
   
 
  0.577
Rpe
Ribulose-phosphate 3-epimerase (260 aa)
   
 
  0.559
RPE2
Ribulose-phosphate 3-epimerase (227 aa)
   
 
  0.559
Phatr12668
Predicted protein (213 aa)
   
 
  0.559
Phatr8475
Pseudouridine synthase (63 aa)
         
  0.533
Phatr5217
Pseudouridine synthase (216 aa)
         
  0.533
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (16%) [HD]