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Phatr6914 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr6914" - Peptide deformylase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr6914Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins (160 aa)    
Predicted Functional Partners:
Phatr1690
Predicted protein (495 aa)
   
   
  0.831
Phatr11799
Predicted protein (84 aa)
   
 
  0.807
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (98 aa)
   
 
  0.753
Phatr32845
Predicted protein (278 aa)
     
 
  0.751
Phatr50701
Predicted protein; Belongs to the universal ribosomal protein uS12 family (143 aa)
     
 
  0.719
Phatr9894
Predicted protein (140 aa)
   
 
  0.711
Phatr13682
Predicted protein (220 aa)
     
 
  0.710
Phatr19103
Predicted protein (102 aa)
   
      0.707
Phatr23324
Predicted protein; Belongs to the universal ribosomal protein uL5 family (176 aa)
     
 
  0.705
Phatr9259
Predicted protein (92 aa)
   
 
  0.693
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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