PHATR_7088 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHATR_7088

Predicted protein (104 aa)

Predicted Functional Partners:

ACC2

0.947

ACC1

0.857

Phatr13617

0.767

Phatr9890

0.754

Phatr9157

0.754

Phatr50148

0.754

Phatr48490

0.754

Phatr48157

0.754

Phatr46160

0.754

Phatr46158

0.754

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACC1	ACC2	Phatr54926	Phatr55209	Acetyl-coa carboxylase	Biotin carboxylase	0.994
ACC1	PHATR_7088	Phatr54926	Phatr7088	Acetyl-coa carboxylase	Predicted protein	0.857
ACC1	Phatr13617	Phatr54926	Phatr13617	Acetyl-coa carboxylase	Predicted protein	0.793
ACC2	ACC1	Phatr55209	Phatr54926	Biotin carboxylase	Acetyl-coa carboxylase	0.994
ACC2	PHATR_7088	Phatr55209	Phatr7088	Biotin carboxylase	Predicted protein	0.947
ACC2	Phatr13617	Phatr55209	Phatr13617	Biotin carboxylase	Predicted protein	0.898
PHATR_7088	ACC1	Phatr7088	Phatr54926	Predicted protein	Acetyl-coa carboxylase	0.857
PHATR_7088	ACC2	Phatr7088	Phatr55209	Predicted protein	Biotin carboxylase	0.947
PHATR_7088	Phatr13617	Phatr7088	Phatr13617	Predicted protein	Predicted protein	0.767
PHATR_7088	Phatr46158	Phatr7088	Phatr46158	Predicted protein	Predicted protein	0.754
PHATR_7088	Phatr46160	Phatr7088	Phatr46160	Predicted protein	Predicted protein	0.754
PHATR_7088	Phatr48157	Phatr7088	Phatr48157	Predicted protein	Predicted protein	0.754
PHATR_7088	Phatr48490	Phatr7088	Phatr48490	Predicted protein	Predicted protein	0.754
PHATR_7088	Phatr50148	Phatr7088	Phatr50148	Predicted protein	Predicted protein	0.754
PHATR_7088	Phatr9157	Phatr7088	Phatr9157	Predicted protein	Predicted protein	0.754
PHATR_7088	Phatr9890	Phatr7088	Phatr9890	Predicted protein	Predicted protein	0.754
Phatr13617	ACC1	Phatr13617	Phatr54926	Predicted protein	Acetyl-coa carboxylase	0.793
Phatr13617	ACC2	Phatr13617	Phatr55209	Predicted protein	Biotin carboxylase	0.898
Phatr13617	PHATR_7088	Phatr13617	Phatr7088	Predicted protein	Predicted protein	0.767
Phatr46158	PHATR_7088	Phatr46158	Phatr7088	Predicted protein	Predicted protein	0.754

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2017

Credits

Access

Info

About