STRINGSTRING
Phatr7293 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr7293" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr7293Predicted protein (160 aa)    
Predicted Functional Partners:
Phatr21420
Predicted protein (743 aa)
        
      0.625
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
       
  0.569
Phatr45431
Predicted protein (1158 aa)
     
 
  0.551
P5CS
Delta l-pyrroline-5-carboxylate synthetase (747 aa)
   
 
  0.540
Phatr18027
Predicted protein (706 aa)
   
 
  0.540
Phatr45621
Predicted protein (426 aa)
        
 
  0.527
Phatr31973
Predicted protein (654 aa)
        
 
  0.515
Phatr15442
Predicted protein (320 aa)
        
 
  0.515
GAPN
Glyceraldehyde-3-phosphate dehydrogenase (588 aa)
     
  0.460
Phatr10902
Predicted protein (473 aa)
         
  0.445
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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