STRINGSTRING
Phatr7346 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr7346" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr7346Predicted protein (134 aa)    
Predicted Functional Partners:
Phatr12394
Predicted protein (260 aa)
     
  0.997
Phatr12144
Predicted protein (220 aa)
   
  0.994
Phatr43105
Predicted protein (455 aa)
     
 
  0.993
Phatr30365
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (677 aa)
     
 
  0.993
Phatr15619
60S ribosomal protein L13 (171 aa)
     
  0.989
Phatr36743
Predicted protein (149 aa)
   
  0.987
Phatr45356
Predicted protein (479 aa)
     
 
  0.985
Phatr14145
Predicted protein (516 aa)
     
  0.981
Phatr2182
Predicted protein (360 aa)
     
 
  0.979
Phatr30262
Ribosomal protein L19 (192 aa)
     
  0.979
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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