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Phatr7349 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr7349" - H/ACA ribonucleoprotein complex subunit in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr7349H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1 (87 aa)    
Predicted Functional Partners:
Phatr48920
Predicted protein (317 aa)
     
 
  0.997
Phatr36743
Predicted protein (149 aa)
     
 
  0.997
Phatr9197
Predicted protein (64 aa)
     
 
  0.988
Phatr19552
Predicted protein (529 aa)
   
 
  0.972
Phatr20773
Predicted protein (484 aa)
     
 
  0.961
Phatr11965
Predicted protein (194 aa)
     
 
  0.961
Phatr18579
Predicted protein (510 aa)
   
 
  0.951
Phatr9983
Predicted protein (123 aa)
     
 
  0.932
Phatr21557
Predicted protein (348 aa)
     
 
  0.894
Phatr25714
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family (205 aa)
     
 
  0.832
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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