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STRINGSTRING
Phatr7358 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr7358" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr7358Predicted protein; Belongs to the universal ribosomal protein uL11 family (137 aa)    
Predicted Functional Partners:
Phatr14713
Predicted protein (137 aa)
   
 
  0.982
Phatr12238
Predicted protein (184 aa)
   
 
  0.979
Phatr14535
Predicted protein (102 aa)
   
 
  0.975
Phatr11799
Predicted protein (84 aa)
   
 
  0.972
Phatr14915
Predicted protein (200 aa)
   
 
  0.971
Phatr29097
Predicted protein; Belongs to the universal ribosomal protein uS7 family (225 aa)
   
 
  0.941
Phatr19103
Predicted protein (102 aa)
   
 
  0.937
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (98 aa)
     
 
  0.936
Phatr9894
Predicted protein (140 aa)
   
 
  0.897
Phatr9411
30S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family (78 aa)
     
 
  0.892
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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