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Phatr7867 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr7867" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr7867Predicted protein (80 aa)    
Predicted Functional Partners:
Phatr7913
Predicted protein (76 aa)
   
 
  0.779
Phatr7910
Predicted protein (70 aa)
   
 
  0.779
Phatr55177
Spermine/spermidine synthase (299 aa)
   
 
  0.779
Phatr51460
Annotation not available (348 aa)
   
 
  0.779
Phatr13386
Spermine/spermidine synthase (275 aa)
   
 
  0.779
Phatr11608
Predicted protein (76 aa)
   
 
  0.779
Phatr23811
Predicted protein (817 aa)
         
  0.419
Phatr40880
Agmatinase (416 aa)
         
  0.417
Phatr38509
Predicted protein (301 aa)
         
  0.417
ODC3
Ornithine decarboxylase (564 aa)
         
  0.404
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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