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Phatr7913 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr7913" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr7913Predicted protein (76 aa)    
Predicted Functional Partners:
Phatr7867
Predicted protein (80 aa)
   
 
  0.779
Phatr7621
Predicted protein (80 aa)
   
 
  0.779
Phatr7617
Predicted protein (94 aa)
   
 
  0.779
ODC3
Ornithine decarboxylase (564 aa)
   
  0.746
Phatr2834
Predicted protein (392 aa)
   
  0.746
Phatr21592
Diaminopimelate decarboxylase (481 aa)
   
  0.746
ODC2
Ornithine decarboxylase (390 aa)
   
  0.746
Phatr38509
Predicted protein (301 aa)
       
  0.720
Phatr40880
Agmatinase (416 aa)
       
  0.645
Phatr3362
Predicted protein (322 aa)
     
 
  0.619
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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