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STRINGSTRING
Phatr7923 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr7923" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr7923Predicted protein (83 aa)    
Predicted Functional Partners:
Phatr12144
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (220 aa)
     
 
  0.980
Phatr2182
Predicted protein (360 aa)
     
 
  0.977
Phatr12394
Predicted protein (260 aa)
     
 
  0.976
Phatr7346
Predicted protein (134 aa)
     
 
  0.971
EIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis (249 aa)
     
 
  0.952
Phatr22868
Predicted protein (551 aa)
     
 
  0.941
Phatr29217
Predicted protein (406 aa)
     
 
  0.935
Phatr45356
Predicted protein (479 aa)
     
 
  0.922
Phatr14145
Predicted protein (516 aa)
     
 
  0.876
Phatr43105
Predicted protein (455 aa)
     
 
  0.875
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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