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Phatr8000 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8000" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8000Predicted protein (119 aa)    
Predicted Functional Partners:
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
 
  0.725
Phatr43464
Predicted protein (2890 aa)
     
        0.576
Phatr13476
Predicted protein (271 aa)
   
        0.567
Phatrdraft955
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1674 aa)
   
   
  0.544
Phatr48416
Predicted protein (511 aa)
   
   
  0.544
Phatr3334
Predicted protein (290 aa)
   
   
  0.544
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
   
 
  0.526
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
   
 
  0.526
Phatr43677
Predicted protein (813 aa)
   
      0.496
Phatr38965
Predicted protein (1383 aa)
   
      0.496
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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