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Phatr8000 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8000" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8000Predicted protein (119 aa)    
Predicted Functional Partners:
Phatr23472
tRNA (guanine(26)-N(2))-dimethyltransferase (504 aa)
     
   
  0.858
Phatr17967
Putative tRNA (cytidine(32)/guanosine(34)-2’-O)-methyltransferase; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (315 aa)
   
 
  0.822
Phatr12384
Predicted protein (231 aa)
   
   
  0.802
Phatr5217
Pseudouridine synthase (216 aa)
   
   
  0.799
Phatr16688
Predicted protein (414 aa)
     
   
  0.691
Phatr47468
Predicted protein (538 aa)
     
   
  0.655
Phatrdraft955
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1674 aa)
   
        0.637
Phatr33853
Predicted protein (311 aa)
     
   
  0.631
Phatr43464
Predicted protein (2890 aa)
     
        0.628
Phatr30446
T-complex protein 1 subunit delta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (529 aa)
     
   
  0.624
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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