STRINGSTRING
Phatr8045 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8045" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8045Predicted protein (114 aa)    
Predicted Functional Partners:
Phatr21660
Predicted protein (2400 aa)
       
  0.889
Phatr28730
Predicted protein (115 aa)
     
 
  0.702
Phatr27286
Predicted protein (163 aa)
     
 
  0.702
Phatr52316
Aspartokinase (468 aa)
       
 
  0.653
Phatr30282
Predicted protein (341 aa)
       
  0.636
Phatr15031
Predicted protein (118 aa)
       
  0.636
Phatr22113
Bifunctional aspartokinase (870 aa)
     
 
  0.631
Phatr8777
Predicted protein (110 aa)
     
      0.581
TFIIH-p44
Suppressor of stem-loop protein 1 (413 aa)
       
      0.579
Phatr9400
Predicted protein (133 aa)
     
 
  0.569
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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