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STRINGSTRING
Trx-f protein (Phaeodactylum tricornutum) - STRING interaction network
"Trx-f" - Thioredoxin f in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trx-fThioredoxin f (107 aa)    
Predicted Functional Partners:
Trx-y
Thioredoxin y (178 aa)
   
 
  0.797
Phatr54983
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
   
 
  0.612
Phatr14192
Predicted protein; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family (311 aa)
   
 
  0.595
Gsr_2
Glutathione reductase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family (496 aa)
   
 
  0.592
SBPase
Seduheptulose bisphosphatase (325 aa)
       
 
  0.585
Trx-o
Thioredoxin; Belongs to the thioredoxin family (106 aa)
   
 
  0.566
FBP
Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family (341 aa)
       
 
  0.505
Trx-m
Thioredoxin m (91 aa)
   
 
  0.504
Gsr_1
Glutathione-disulfide reductase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family (507 aa)
   
 
  0.501
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family (614 aa)
   
 
  0.500
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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