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Phatr8111 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8111" - Protein yippee-like in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8111Protein yippee-like; Belongs to the yippee family (99 aa)    
Predicted Functional Partners:
Phatr45060
Predicted protein (567 aa)
       
 
  0.863
Phatr18620
Predicted protein; Belongs to the SNF7 family (222 aa)
     
   
  0.777
Phatr43010
Predicted protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family (219 aa)
     
   
  0.697
Phatr34146
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family (199 aa)
           
  0.668
Phatr48924
Arginyl-tRNA--protein transferase 1; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway (640 aa)
           
  0.610
Phatr42694
Predicted protein (910 aa)
           
  0.610
Phatr10479
Predicted protein (300 aa)
     
   
  0.585
CDC6
Predicted protein (1107 aa)
     
   
  0.584
Phatr40901
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (405 aa)
           
  0.582
Phatr24922
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (111 aa)
           
  0.582
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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