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STRINGSTRING
Phatr8270 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8270" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8270Predicted protein (84 aa)    
Predicted Functional Partners:
Phatr9806
Predicted protein (195 aa)
   
 
  0.690
Phatr8445
Predicted protein (67 aa)
   
 
 
  0.633
Phatr13095
Predicted protein (97 aa)
   
 
  0.610
Phatr9701
Predicted protein (125 aa)
   
 
 
  0.573
Phatr46132
Predicted protein (1007 aa)
     
 
  0.561
Phatr47737
Predicted protein (361 aa)
     
 
  0.558
Phatr23959
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA (605 aa)
     
 
  0.557
Phatr13360
Predicted protein (226 aa)
     
 
  0.553
helicase_5
Predicted protein (428 aa)
     
 
  0.550
Phatr41450
Predicted protein (291 aa)
   
 
 
  0.540
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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