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STRINGSTRING
ARL1 protein (Phaeodactylum tricornutum) - STRING interaction network
"ARL1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARL1Predicted protein; Belongs to the small GTPase superfamily. Arf family (184 aa)    
Predicted Functional Partners:
Phatr8461
Predicted protein (53 aa)
     
 
  0.925
Rab6
Predicted protein (236 aa)
     
 
  0.908
Phatr49739
Predicted protein (1813 aa)
       
 
  0.832
Phatr33394
Predicted protein (175 aa)
     
 
  0.814
Phatr15422
Predicted protein (240 aa)
   
 
 
  0.807
Phatr7181
Predicted protein (122 aa)
       
 
  0.751
Sec7D
Predicted protein (2168 aa)
       
 
  0.751
Phatr49198
Predicted protein (1397 aa)
       
 
  0.751
Phatr48947
Glycylpeptide N-tetradecanoyltransferase; Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins (343 aa)
     
 
  0.746
Phatr54143
Predicted protein (1695 aa)
     
 
  0.703
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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