STRINGSTRING
ARL1 protein (Phaeodactylum tricornutum) - STRING interaction network
"ARL1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARL1Predicted protein (184 aa)    
Predicted Functional Partners:
Phatr47992
Predicted protein (432 aa)
     
  0.928
Phatr15422
Predicted protein (240 aa)
    
 
  0.917
Phatr7181
Predicted protein (122 aa)
        
  0.893
Sec7D
Predicted protein (2168 aa)
        
  0.893
Rab6
Predicted protein (236 aa)
      
  0.767
Phatr7164
Predicted protein (170 aa)
        
  0.744
Phatr21501
Predicted protein (175 aa)
        
  0.744
Phatr17109
Predicted protein (172 aa)
        
  0.744
Phatr16364
Predicted protein (288 aa)
        
  0.744
Phatr54143
Predicted protein (1695 aa)
        
  0.742
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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